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Welcome to the Clinical Information Modeling Initiative (CIMI) wiki!


Welcome to the CIMI Wiki. The content of this site can be read by anyone - an account is not needed. If you need to edit or add to the wiki content, you may request an authoring account.

To be added to the CIMI email list please contact Virginia Riehl at mailto:virginia.riehl@verizon.net

Quick Links Taskforces F2F Meetings & Summaries


  • Upcoming meetings:

The CIMI Glossary has been transferred into the wiki. We still need to get a a graphics rendering tool installed so we can look at in a fashion similar to the maps in the source document. The glossary pages are organized as a combination of "categories" and "individuals". Categories represent classes of things, such as Organisation, Standard or Specification, Object Management Group Specification, etc. Individuals represents instances of these categories, such as Object Management Group, Unified Modeling Language, Unified Modeling Language, etc.

Most categories and individuals have one or more reference definitions. These definitions are drawn from external sources and should not be changed. (TODO: revert changes that have already been made). A category of individual also has an official CIMI definition that may or may not match the reference definition. To suggest changes to the CIMI definition, use the "Definition" link on the page. As an example, if you wanted to suggest updates or changes to the definition of Organisation, you would click on the "Definition:" link, which would take you to a page named "Organisation_Definition". You could enter comments in the discussion section and/or make changes to the definition itself.

Don't worry about making changes. Mediawiki maintains a complete history of changes and anything that is done can be readily undone. In addition, Mediawiki detects simultaneous changes and provides a reasonable resolution mechanism.

This is there because the definitions are "transcluded" into the containing page (e.g. Organisation_Definition is included in the Organisation page, but we don't want to classify Organisation as a Definition - just the definition itself.

The three main categories of CIMI models are:

CIMI clinical models are defined by constraining the CIMI reference model. Each example instance of a CIMI Clinical Model is an instance of the CIMI reference model, which conforms to the constraints defined by the associated clinical model. The CIMI Clinical Patterns are a set of reusable models that define clinical semantics common to multiple clinical models. Each CIMI Clinical model specialises and/or extends at least one CIMI Clinical Pattern, to increase the design consistency between similar clinical models.

An early draft CIMI Modelling Styleguide can be found here.

Models that have been contributed to CIMI can be found here.

Style Guides


CIMI Modeling TF

Archived Minutes from previous TFs

CIMI Glossary TF

CIMI Reference Model (CRM) TF

Additional information can be found at the Mediawiki Main Help page

Note: The following article is transcluded from mediawikiwiki:Help:Formatting:


PD Important note: When you edit this page, you agree to release your contribution into the public domain. If you don't want this or can't do this due to license restrictions, please don't edit. This page is one of the Public Domain Help Pages, which can be freely copied into fresh wiki installations and/or distributed with MediaWiki software; see Help:Contents for an overview of all pages. See Project:PD help/Copying for instructions. PD


You can format your text by using wiki markup. This consists of normal characters like asterisks, apostrophes or equal signs which have a special function in the wiki, sometimes depending on their position. For example, to format a word in italic, you include it in two pairs of apostrophes like ''this''.

Contents

Text formatting markup [edit]

Description You type You get
Character (inline) formatting – applies anywhere
Italic text 
''italic''

italic
Bold text 
'''bold'''

bold
Bold and italic 
'''''bold & italic'''''

bold & italic
Strike text 
<strike> strike text </strike>
strike text
Escape wiki markup 
<nowiki>no ''markup''</nowiki>

no ''markup''
Escape wiki markup once 
[[API]]<nowiki/>extension

APIextension
Section formatting – only at the beginning of the line
Headings of different levels 

== Level 2 ==

=== Level 3 ===

==== Level 4 ====

===== Level 5 =====

====== Level 6 ======

Level 2

Level 3

Level 4

Level 5
Level 6
Horizontal rule 
Text before
----
Text after

Text before

Text after
Bullet list 
* Start each line
* with an [[Wikipedia:asterisk|asterisk]] (*).
** More asterisks give deeper
*** and deeper levels.
* Line breaks <br />don't break levels.
*** But jumping levels creates empty space.
Any other start ends the list.
  • Start each line
  • with an asterisk (*).
    • More asterisks give deeper
      • and deeper levels.
  • Line breaks
    don't break levels.
      • But jumping levels creates empty space.

Any other start ends the list.
Numbered list 
# Start each line
# with a [[Wikipedia:Number_sign|number sign]] (#).
## More number signs give deeper
### and deeper
### levels.
# Line breaks <br />don't break levels.
### But jumping levels creates empty space.
# Blank lines

# end the list and start another.
Any other start also
ends the list.
  1. Start each line
  2. with a number sign (#).
    1. More number signs give deeper
      1. and deeper
      2. levels.
  3. Line breaks
    don't break levels.
      1. But jumping levels creates empty space.
  4. Blank lines
  1. end the list and start another.

Any other start also ends the list.
Definition list 
;item 1
: definition 1
;item 2
: definition 2-1
: definition 2-2

item 1
definition 1
item 2
definition 2-1
definition 2-2
Indent text 
: Single indent
:: Double indent
::::: Multiple indent
This workaround may harm accessibility.

Single indent
Double indent
Multiple indent
Mixture of different types of list 
# one
# two
#* two point one
#* two point two
# three
#; three item one
#: three def one
# four
#: four def one
#: this looks like a continuation
#: and is often used
#: instead <br />of <nowiki><br /></nowiki>
# five
## five sub 1
### five sub 1 sub 1
## five sub 2
The usage of #: and *: for breaking a line within an item may also harm accessibility.
  1. one
  2. two
    • two point one
    • two point two
  3. three
    three item one
    three def one
  4. four
    four def one
    this looks like a continuation
    and is often used
    instead
    of <br />
  5. five
    1. five sub 1
      1. five sub 1 sub 1
    2. five sub 2
Preformatted text 
 Start each line with a space.
 Text is '''preformatted''' and
 ''markups'' '''''can''''' be done.
This way of preformatting only applies to section formatting. Character formatting markups are still effective.
 
Start each line with a space.
Text is preformatted and
markups can be done.
Preformatted text blocks 
 <nowiki>Start with a space in the first column,
(before the <nowiki>).

Then your block format will be
    maintained.
 
This is good for copying in code blocks:

def function():
    """documentation string"""

    if True:
        print True
    else:
        print False</nowiki>

Start with a space in the first column,
(before the <nowiki>).

Then your block format will be
    maintained.

This is good for copying in code blocks:

def function():
    """documentation string"""

    if True:
        print True
    else:
        print False

Paragraphs [edit]

MediaWiki ignores single line breaks. To start a new paragraph, leave an empty line. You can force a line break within a paragraph with the HTML tag <br />.

HTML tags [edit]

Some HTML tags are allowed in MediaWiki, for example <code>, <div>, <span> and <font>. These apply anywhere you insert them.

Description You type You get
Inserted
(Displays as underline in most browsers)		 
<ins>Inserted</ins>

or

<u>Underline</u>

Inserted

or

Underline
Deleted
(Displays as strikethrough in most browsers)		 
<s>Struck out</s>

or

<del>Deleted</del>

Struck out

or

Deleted
Fixed width text 
<code>Source code</code>

or

<tt>Fixed width text</tt>

Source code

or

Fixed width text
Blockquotes 
Text before
<blockquote>Blockquote</blockquote>
Text after

Text before

Blockquote

Text after
Comment 
<!-- This is a comment -->
Comments are only visible 
in the edit zone.

Comments are only visible in the edit zone.
Completely preformatted text 
<pre> Text is '''preformatted''' and 
''markups'' '''''cannot''''' be done</pre>
For marking up of preformatted text, check the "Preformatted text" entry at the end of the previous table.
 
 Text is '''preformatted''' and 
''markups'' '''''cannot''''' be done
Customized preformatted text 
<pre style="color: red">
Text is '''preformatted''' 
with a style and 
''markups'' '''''cannot''''' be done
</pre>
A CSS style can be named within the style property.
 
Text is '''preformatted''' 
with a style and 
''markups'' '''''cannot''''' be done

continued:

Description You type You get
Customized preformatted text with text wrap according to available width 
<pre style="white-space: pre-wrap; 
white-space: -moz-pre-wrap; 
white-space: -pre-wrap; 
white-space: -o-pre-wrap; 
word-wrap: break-word;">
This long sentence is used to demonstrate text wrapping. This additional sentence makes the text even longer.
</pre>

This long sentence is used to demonstrate text wrapping. This additional sentence makes the text even longer.
Preformatted text with text wrap according to available width 
<code>
This long sentence is used to demonstrate text wrapping. This additional sentence makes the text even longer.
</code>

This long sentence is used to demonstrate text wrapping. This additional sentence makes the text even longer.

Inserting symbols [edit]

Symbols and other special characters not available on your keyboard can be inserted through a special sequence of characters. Those sequences are called HTML entities. For example, the following sequence (entity) &rarr; when inserted will be shown as right arrow HTML symbol → and &mdash; when inserted will be shown as an em dash HTML symbol —.

Hover any character to find out the symbol that produces it. Some symbols not available in the current font will appear as empty squares.
HTML symbol entities
Á á Â â ´ Æ æ À à ℵ Α α & ∧ ∠ Å å ≈ Ã ã Ä ä „ Β β ¦ • ∩ Ç ç ¸ ¢
Χ χ ˆ ♣ ≅ © ↵ ∪ ¤ † ‡ ↓ ⇓ ° Δ δ ♦ ÷ É é Ê ê È è ∅     Ε ε ≡ Η η
Ð ð Ë ë € ∃ ƒ ∀ ½ ¼ ¾ ⁄ Γ γ ≥ > ↔ ⇔ ♥ … Í í Î î ¡ Ì ì ℑ ∞ ∫ Ι ι
¿ ∈ Ï ï Κ κ Λ λ 〈 « ← ⇐ ⌈ “ ≤ ⌊ ∗ ◊ ‎ ‹ ‘ < ¯ — µ · − Μ μ ∇   –
≠ ∋ ¬ ∉ ⊄ Ñ ñ Ν ν Ó ó Ô ô Œ œ Ò ò ‾ Ω ω Ο ο ⊕ ∨ ª º Ø ø Õ õ ⊗ Ö
ö ∂ ‰ ⊥ Φ φ Π π ϖ ± £ ′ ″ ∏ ∝ Ψ ψ " √ 〉 » → ⇒ ⌉ ” ℜ ® ⌋ Ρ ρ ‏
› ’ ‚ Š š ⋅ § ­ Σ σ ς ∼ ♠ ⊂ ⊆ ∑ ⊃ ¹ ² ³ ⊇ ß Τ τ ∴ Θ θ ϑ   Þ þ ˜
× ™ Ú ú ↑ ⇑ Û û Ù ù ¨ ϒ Υ υ Ü ü ℘ Ξ ξ Ý ý ¥ ÿ Ÿ Ζ ζ ‍ ‌
Description You type You get
Copyright symbol 
&copy;

©
Greek delta letter symbol 
&delta;

δ
Euro currency symbol 
&euro;

€

See the list of all HTML entities on the Wikipedia article List of HTML entities. Additionally, MediaWiki supports two non-standard entity reference sequences: &רלמ; and &رلم; which are both considered equivalent to &rlm; which is a right-to-left mark. (Used when combining right to left languages with left to right languages in the same page.)

HTML tags and symbol entities displayed themselves (with and without interpreting them) [edit]

&amp;euro;  → &euro;
<span style="color: red; text-decoration: line-through;">Typo to be corrected</span>  → Typo to be corrected
&lt;span style="color: red; text-decoration: line-through;">Typo to be corrected&lt;/span>  → <span style="color: red; text-decoration: line-through;">Typo to be corrected</span>

Nowiki for HTML [edit]

<nowiki /> can prohibit (HTML) tags:

  • <<nowiki />pre>  → <pre>

But not & symbol escapes:

  • &<nowiki />amp;  → &

Other formatting [edit]

Beyond the text formatting markup shown hereinbefore, here are some other formatting references:

You can find more references at Help:Contents.

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The style guide for CIMI models is still under construction. As soon we have decided on structure and content the guide will be published here.

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